Dr Gareth Price
Head of Computational Biology
Research Computing Centre
+61 7 334 62638
Journal Articles
Mehta, Subina, Bernt, Matthias, Chambers, Matthew, Fahrner, Matthias, Foell, Melanie Christine, Gruening, Bjoern, Horro, Carlos, Johnson, James E., Loux, Valentin, Rajczewski, Andrew T., Schilling, Oliver, Vandenbrouck, Yves, Gustafsson, Ove Johan Ragnar, Thang, W. C. Mike, Hyde, Cameron, Price, Gareth, Jagtap, Pratik D. and Griffin, Timothy J. (2023). A Galaxy of informatics resources for MS-based proteomics. Expert Review of Proteomics, 20 (11), 251-266. doi: 10.1080/14789450.2023.2265062
Afgan, Enis, Nekrutenko, Anton, Grüning, Bjórn A, Blankenberg, Daniel, Goecks, Jeremy, Schatz, Michael C, Ostrovsky, Alexander E, Mahmoud, Alexandru, Lonie, Andrew J, Syme, Anna, Fouilloux, Anne, Bretaudeau, Anthony, Nekrutenko, Anton, Kumar, Anup, Eschenlauer, Arthur C, Desanto, Assunta D, Guerler, Aysam, Serrano-Solano, Beatriz, Batut, Bérénice, Grüning, Björn A, Langhorst, Bradley W, Carr, Bridget, Raubenolt, Bryan A, Hyde, Cameron J, Bromhead, Catherine J, Barnett, Christopher B, Royaux, Coline, Gallardo, Cristóbal, Blankenberg, Daniel ... Briggs, Peter J (2022). The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update. Nucleic Acids Research, 50 (W1), W345-W351. doi: 10.1093/nar/gkac247
Tay, Joshua, Barbier, Valerie, Helwani, Falak M, Price, Gareth R, Levesque, Jean-Pierre and Winkler, Ingrid G (2021). Prostacyclin is an endosteal bone marrow niche component and its clinical analog iloprost protects hematopoietic stem cell potential during stress. Stem Cells, 39 (11), 1532-1545. doi: 10.1002/stem.3438
Sheng, Yong H., Ng, Garrett Z., Summers, Kim M., Every, Alison L., Price, Gareth, Hasnain, Sumaira Z., Sutton, Philip and McGuckin, Michael A. (2020). Influence of the MUC1 cell surface mucin on gastric mucosal gene expression profiles in response to Helicobacter pylori infection in mice. Frontiers in Cellular and Infection Microbiology, 10 343, 343. doi: 10.3389/fcimb.2020.00343
Zhang, Ping, West, Nicholas P., Chen, Pin-Yen, Thang, Mike W. C., Price, Gareth, Cripps, Allan W. and Cox, Amanda J. (2019). Selection of microbial biomarkers with genetic algorithm and principal component analysis. BMC Bioinformatics, 20 (S6) 413, 1-8. doi: 10.1186/s12859-019-3001-4
Matsika, Admire, Gallagher, Renee, Williams, Mark, Joy, Christopher, Lowe, Emma, Price, Gareth, Webb, Lachlan, Marquart, Louise, Pelecanos, Anita, Harraway, James, Venter, Deon J. and Armes, Jane E. (2019). DNA extraction from placental, fetal and neonatal tissue at autopsy: what organ to sample for DNA in the genomic era?. Pathology, 51 (7), 705-710. doi: 10.1016/j.pathol.2019.09.001
Thang, Mike W. C., Chua, Xin-Yi, Price, Gareth, Gorse, Dominique and Field, Matt A. (2019). MetaDEGalaxy: Galaxy workflow for differential abundance analysis of 16s metagenomic data. F1000Research, 8 726, 1-17. doi: 10.12688/f1000research.18866.2
Armes, Jane E., Williams, Mark, Price, Gareth, Wallis, Tristan, Gallagher, Renee, Matsika, Admire, Joy, Christopher, Galea, Melanie, Gardener, Glenn, Leach, Rick, Swagemakers, Sigrid Ma, Tearle, Rick, Stubbs, Andrew, Harraway, James, van der Spek, Peter J. and Venter, Deon J. (2018). Application of whole genome sequencing technology in the investigation of genetic causes of fetal, perinatal, and early infant death. Pediatric and Developmental Pathology, 21 (1), 54-67. doi: 10.1177/1093526617715528
Armes, Jane E., Squires, Lisa, Lourie, Rohan, Williams, Mark, Gallagher, Renee, Price, Gareth, Stubbs, Andrew, Swagemakers, Sigrid M. A., van der Spek, Peter J., Harraway, James, Thomas, Joseph and Venter, Deon J. (2017). Isolated ventricular noncompaction cardiomyopathy presenting as fetal hydrops at 24 weeks gestation: a genomic analysis. Pediatric and Developmental Pathology, 20 (3), 245-250. doi: 10.1177/1093526616686235
Schlebusch, S., Price, G. R., Gallagher, R. L., Horton-Szar, V., Elbourne, L. D. H., Griffin, P., Venter, D. J., Jensen, S. O. and van Hal, S. J. (2017). MALDI-TOF MS meets WGS in a VRE outbreak investigation. European Journal of Clinical Microbiology and Infectious Diseases, 36 (3), 1-5. doi: 10.1007/s10096-016-2824-4
Liu, Cheng, Gallagher, Renee L., Price, Gareth R., Bolton, Elizabeth, Joy, Christopher, Harraway, James, Venter, Deon J. and Armes, Jane E. (2016). Ovarian microcystic stromal tumor: a rare clinical manifestation of familial adenomatous polyposis. International Journal of Gynecological Pathology, 35 (6), 561-565. doi: 10.1097/PGP.0000000000000289
Samaraweera, Saumya E., O'Keefe, Louise V., Price, Gareth R., Venter, Deon J. and Richards, Robert I. (2013). Distinct roles for Toll and autophagy pathways in double-stranded RNA toxicity in a Drosophila model of expanded repeat neurodegenerative diseases. Human Molecular Genetics, 22 (14), 2811-2819. doi: 10.1093/hmg/ddt130
Zamzami, Mazin A., Duley, John A., Price, Gareth R., Venter, Deon J., Yarham, John W., Taylor, Robert W., Cately, Laurence P., Florin, Timothy H. J., Marinaki, Anthony M. and Bowling, Francis (2013). Inosine Triphosphate Pyrophosphohydrolase (ITPA) polymorphic sequence variants in adult hematological malignancy patients and possible association with mitochondrial DNA defects. Journal of Hematology and Oncology, 6 (1) 24, 1-12. doi: 10.1186/1756-8722-6-24
Griffin, Paul M., Price, Gareth R., Schooneveldt, Jacqueline M., Schlebusch, Sanmarie, Tilse, Martyn H., Urbanski, Tess, Hamilton, Brett and Venter, Deon (2012). Use of matrix-assisted laser desorption ionization-time of flight mass spectrometry to identify vancomycin-resistant enterococci and investigate the epidemiology of an outbreak. Journal of Clinical Microbiology, 50 (9), 2918-2931. doi: 10.1128/JCM.01000-12
Moore, Andrew S., Norris, Ross, Price, Gareth, Nguyen, Thu, Ming, Ni, George, Rani, van Breda, Karin, Duley, John, Charles, Bruce and Pinkerton, Ross (2011). Vincristine pharmacodynamics and pharmacogenetics in children with cancer: A limited-sampling, population modelling approach. Journal of Paediatric and Child Health, 47 (12), 875-882. doi: 10.1111/j.1440-1754.2011.02103.x
Zamzami, Mazin A., Price, Gareth R., Taylor, Robert W., Blakely, Emma L., Oancea, Iulia, Bowling, Francis and Duley, John A. (2011). Insights into N-calls of mitochondrial DNA sequencing using MitoChip v2.0. BMC Research Notes, 4 (1) 426, 1-8. doi: 10.1186/1756-0500-4-426
van Eyk, Clare L., O'Keefe, Louise V., Lawlor, Kynan T., Samaraweera, Saumya E., McLeod, Catherine J., Price, Gareth R., Venter, Deon J. and Richards, Robert I. (2011). Perturbation of the Akt/Gsk3-β signalling pathway is common to Drosophila expressing expanded untranslated CAG, CUG and AUUCU repeat RNAs. Human Molecular Genetics, 20 (14), 2783-94. doi: 10.1093/hmg/ddr177
Sutherland, Allison, Thomas, Mervyn, Brandon, Roslyn A., Brandon, Richard B., Lipman, Jeffrey, Tang, Benjamin, McLean, Anthony, Pascoe, Ranald, Price, Gareth, Nguyen, Thu, Stone, Glenn and Venter, Deon (2011). Development and validation of a novel molecular biomarker diagnostic test for the early detection of sepsis. Critical Care, 15 (3) R149, 1-11. doi: 10.1186/cc10274
O'Keefe, Louise V., Colella, Alex, Dayan, Sonia, Chen, Qingwen, Choo, Amanda, Jacob, Reuben, Price, Gareth, Venter, Deon and Richards, Robert I. (2011). Drosophila orthologue of WWOX, the chromosomal fragile site FRA16D tumour suppressor gene, functions in aerobic metabolism and regulates reactive oxygen species. Human Molecular Genetics, 20 (3), 497-509. doi: 10.1093/hmg/ddq495
Schlebusch, S., Price, G. R., Hinds, S., Nourse, C., Schooneveldt, J. M., Tilse, M. H., Liley, H. G., Wallis, T., Bowling, F., Venter, D. and Nimmo, G. R. (2010). First outbreak of PVL-positive nonmultiresistant MRSA in a neonatal ICU in Australia: Comparison of MALDI-TOF and SNP-plus-binary gene typing. European Journal of Clinical Microbiology and Infectious Diseases, 29 (10), 1311-1314. doi: 10.1007/s10096-010-0995-y
Armes, Jane E., Bowlay, Greg, Lourie, Rohan, Venter, Deon J. and Price, Gareth (2010). Differential diagnosis of serous papillary carcinoma of the gynaecological tract and basal breast carcinoma: An immunohistochemical approach. Pathology, 42 (6), 534-539. doi: 10.3109/00313025.2010.508793
Barlow, Sarah, Brooke, Gary, Chatterjee, Konica, Price, Gareth, Pelekanos, Rebecca, Rossetti, Tony, Doody, Marylou, Venter, Deon, Pain, Scott, Gilshenan, Kristen and Atkinson, Kerry (2008). Comparison of human placenta-and bone marrow-derived multipotent mesenchymal stem cells. Stem Cells and Development, 17 (6), 1095-1107. doi: 10.1089/scd.2007.0154
Heazlewood, Chad K., Cook, Matthew C., Eri, Rajaraman, Price, Gareth R., Tauro, Sharyn B., Taupin, Douglas, Thornton, David J., Png, Chin Wen, Crockford, Tanya L., Cornall, Richard J., Adams, Rachel, Kato, Masato, Nelms, Keats A., Hong, Nancy A., Florin, Timothy H. J., Goodnow, Christopher C. and McGuckin, Michael A. (2008). Aberrant mucin assembly in mice causes endoplasmic reticulum stress and spontaneous inflammation resembling ulcerative colitis. PLoS Medicine, 5 (3) e54, 440-460. doi: 10.1371/journal.pmed.0050054
Price, Gareth R., Armes, Jane E., Ramus, Susan J., Provenzano, Elena, Kumar, Beena, Cowie, Tiffany F., Ciciulla, John, Hutchins, Anne-Marie, Thomas, Mervyn and Venter, Deon J. (2006). Phenotype-directed analysis of genotype in early-onset, familial breast cancers. Pathology, 38 (6), 520-527. doi: 10.1080/00313020601024052
Armes, Jane E., Lourie, Rohan, de Silva, Melanie, Stamaratis, Georgia, Boyd, Alison, Kumar, Beena, Price, Gareth, Hyde, Simon, Allen, David, Grant, Peter and Venter, Deon J. (2005). Abnormalities of the RB1 pathway in ovarian serous papillary carcinoma as determined by overexpression of the p16(INK4A) protein. International Journal of Gynecological Pathology, 24 (4), 363-368. doi: 10.1097/01.pgp.0000172083.94934.1e
Venter, Deon J., Ramus, Susan J., Hammet, Fleur M. A., de Silva, Melanie, Hutchins, Anne-Marie, Petrovic, Vida, Price, Gareth and Armes, Jane E. (2005). Complex CGH alterations on chromosome arm 8p at candidate tumor suppressor gene loci in breast cancer cell lines. Cancer Genetics and Cytogenetics, 160 (2), 134-140. doi: 10.1016/j.cancergencyto.2004.12.007
Armes, Jane E., Hammet, Fleur, de Silva, Melanie, Ciciulla, John, Ramus, Susan J., Soo, Wee-Kheng, Mahoney, Alexis, Yarovaya, Natalia, Henderson, Michael A., Gish, Kurt, Hutchins, Anne-Marie, Price, Gareth R. and Venter, Deon J. (2004). Candidate tumor-suppressor genes on chromosome arm 8p in early-onset and high-grade breast cancers. Oncogene, 23 (33), 5697-5702. doi: 10.1038/sj.onc.1207740
DOROW, DS, DEVEREUX, L, TU, GF, PRICE, G, NICHOLL, JK, SUTHERLAND, GR and SIMPSON, RJ (1995). COMPLETE NUCLEOTIDE-SEQUENCE, EXPRESSION, AND CHROMOSOMAL LOCALIZATION OF HUMAN MIXED-LINEAGE KINASE-2. European Journal of Biochemistry, 234 (2), 492-500. doi: 10.1111/j.1432-1033.1995.492_b.x
Conference Papers
Tay, Joshua, Levesque, Jean-Pierre, Helwani, Falak, Price, Gareth, Nowlan, Bianca, Barbier, Valerie and Winkler, Ingrid G. (2018). Prostaglandin I-2 in the endosteal bone marrow niche as a novel regulator of hematopoietic stem cells. 60th Annual Meeting of the American-Society-of-Hematology (ASH), San Diego, CA United States, 1-4 December 2018. Washington, DC United States: American Society of Hematology. doi: 10.1182/blood-2018-99-115869
Tay, Joshua, Levesque, Jean-Pierre, Helwani, Falak, Price, Gareth, Barbier, Valerie, Nowlan, Bianca and Winkler, Ingrid (2016). Prostaglandin I2 is produced in the endosteal region of the bone marrow and protects haematopoietic stem cell from irradiation stress. 45th Annual Scientific Meeting of the International Society for Experimental Hematology (ISEH), San Diego, CA, United States, 25-28 August 2016. Philadelphia, PA, United States: Elsevier. doi: 10.1016/j.exphem.2016.06.224
Griffin, Paul, Price, Gareth, Hamilton, Brett, Schooneveldt, Jacqueline, Urbanski, Tess, Schlebusch, Sanmarie and Venter, Deon (2013). Rapid Identification of Vancomycin Resistant Enterococci with Maldi-Tof Mass Spectrometry. The Royal Australasian College of Physicians Future Directions in Health Congress 2013 (RACP), Perth, WA Australia, 26-29 May 2013. Richmond, VIC Australia: Wiley-Blackwell. doi: 10.1111/imj.12153
Griffin, Paul M., Price, Gareth R., Schooneveldt, Jacqueline M., Schlebusch, Sanmarié, Urbanski, Tess, Hamilton, Brett and Venter, Deon (2013). Rapid identification of VRE with MALDI-TOF MS. Australasian Division of the International Academy of Pathology 37th Annual Scientific Meeting 2012, Sydney, NSW Australia, 1-3 June 2012. London, United Kingdom: Elsevier. doi: 10.1097/01.pat.0000426852.32930.4a
Helwani, F., Winkler, I., Price, G. and Levesque, J. P. (2010). A molecular profile of the hematopoietic stem cell niche at the endosteum. 39th Annual Scientific Meeting of the ISEH - Society for Hematology and Stem Cells, Melbourne, VIC, Australia, 15-18 September 2010. Philadelphia, PA, United States: Elsevier.
Eri, Rajaraman D., Florin, Timothy H., Price, Gareth, Heazlewood, Chad K., Cook, Matthew C., Goodnow, Christopher C. and Mcguckin, Michael A. (2007). Endoplasmic reticulum stress in goblet cells leads directly to intestinal inflammation with similarities to ulcerative colitis. Digestive Disease Weeking Meeting/ASGE Postgraduate Course Meeting, Washington, DC, United States, 19-24 May 2007. Philadelphia, PA, United States: Elsevier .