Training
- Upcoming training sessions
- Regular training sessions
- On-demand training sessions
- Tips for using Zoom for Meetups and Training
- Previous training sessions
Upcoming training sessions
Title: Introduction to HPC
Date & time of Next Sessions:
Joint QCIF/RCC Training Event: Wednesday, 19 October 2022, 09:00am–1:00pm (AEST).
Friday, 18 November 2022, 10:00am–1:30pm (AEST).
Friday, 16 December 2022, 10:00am–1:30pm (AEST).
[ Subject to demand ... There may be some tinsel ;-) ]
Tuesday, 31 January 2022, 10:00am–1:30pm (AEST). (to be confirmed)
Short description:
This session will be for new users of Tinaroo and FlashLite.
This training usually takes place from 10:00-13:30 on the last Friday of each month
(Subject to instructor availability and holidays).
Presenters: RCC's Dr David Green and Dr Marlies Hankel.
Training material: Provided online.
Location: Via Zoom video conferencing.
The Intro to HPC Training will take place via Zoom videoconferencing until further notice.
Register: Via email to rcc-support@uq.edu.au.
Title: Wiener HPC Training
Date & time: Unscheduled
Short description:
The Wiener HPC Training is not run on a regular schedule.
If there is sufficient demand we can explore running a one off.This two-hour information session will be for new users of the Wiener HPC.
Once you have completed the Intro to HPC training (see above) and have a thorough understanding of what you are proposing to use Wiener for, please email rcc-support@uq.edu.au regarding Wiener HPC training.
Presenters: QBI's Irek Porebski and RCC's Jake Carroll.
Training material: Provided online.
Location:
Register: Via email to rcc-support@uq.edu.au (after you have completed the Intro to HPC training (see above) and have a thorough understanding of what workload you are proposing to run on use Wiener).
Title: Introduction to Network Visualisation and Cytoscape
Date & time: To be advised.
Short description: In this hands-on workshop, an introduction will be given to how networks or graphs are defined and methods to visualise them. The primary tool will be Cytoscape, a free, powerful multi-platform application for visualisation and analysis of networks.
Presenters: RCC's Dr Nick Hamilton and Ollie Cairncross.
Training material: Provided online.
Location: RCC Meeting Room, Room 505, Level 5, Axon Building, Building 47, St Lucia Campus, UQ
Register: Register by emailing either Nick or Ollie.
Specialty training sessions for research groups will be considered and can be requested by emailing the RCC Support Desk: rcc-support@uq.edu.au
Regular training sessions
Dates & time: Monthly, subject to demand. Date and time to be confirmed each month- however generally the last Friday morning of each month unless public holidays or other things intervene The next session should be listed at the top of this page content.
Short description: The aim of this short course is to build core competencies in HPC such as command line proficiency, getting data on and off HPC, using software packages, submitting batch jobs and data archiving. The course is very hands-on with brief labs to demonstrate the principles and run examples. All new users of the RCC HPC facilities are encouraged to attend. One-on-one training is provided via RCC Meetups (Hacky Hour and vHPC)
Presenter: RCC's David Green and Marlies Hankel.
Training material: Provided online
Location: via Zoom, until further notice
Title: Dr Nick's Image Clinic
Dates & time: 10am-12am most Mondays
Short description: A weekly image clinic for researchers at the Institute for Molecular Bioscience to provide help in quantification, visualisation and modelling of bio-imaging.
Location: Dr Nick's Office, Room 3.053, Institute for Molecular Bioscience, St Lucia Campus, UQ, QLD 4067
Training material: http://www.imb.uq.edu.au/nick-hamilton
Contact: Dr Nick Hamilton, RCC/IMB, n.hamilton@uq.edu.au
On-demand training
Title: Introduction to Galaxy
Dates & time: By arrangement with Dr Igor Makunin
Short description: We cover different topics of nextGen sequencing data analysis using Galaxy platform, such as RNA-Seq, Variant identification / resequencing, ChIP-Seq, microbial genome assembly, or general data manipulation, including creation and use of workflows in Galaxy. Workflows can be developed on request from users.
Presenter: Dr Igor Makunin, RCC UQ
Contact: Dr Igor Makunin, RCC, i.makunin@uq.edu.au
Tips for using Zoom for Meetups and Training
A critical component of any video conference is the audio.
To avoid problems for all participants, please ensure that you
- use a headset (earbuds, or something more substantial), or an echo cancelling speaker/microphone device, and that you
- ensure that Zoom is configured to use that audio device for both microphone and speaker functions,
- if you are in a noisy environment keep your microphone muted except when you speak. Zoom has a hot key combination for mute/unmute.
Whether working from home, or at work,
- be conscious of visual distractions in the background (eg. colleagues, family members or pets walking past)
- try to avoid having strong lighting behind you which makes you a silhouette (eg. overhead lights, unshaded windows)
- often the glow from your laptop screen or monitor is sufficient front illumination
- if your network bandwidth is constrained, consider stopping your video and sending a still photo instead.
Previous training session titles
Title: Introduction to HPC
Title: Wiener HPC Training
Title: Introduction to Network Visualisation and Cytoscape
Title: Creating a virtual machine on the Australian Research Cloud
Title: Engineering Software Tools Inspire & Evolve workshop
Title: Galaxy workshop
Title: Tinaroo HPC Applications Training
Title: Altair HyperWorks training
Title: Software Carpentry Bootcamp
Title: Statistics for Frightened Bio-Researchers
Title: FlashLite Information Session
Title: Kepler Scientific Workflow System workshop
Title: The Winter School in Mathematical and Computational Biology
Title: NCI Training Sessions — Raijin
Title: ScaleMP vSMP Training Module 1.1
Title: RNA-Seq in Galaxy
Title: Genomics Virtual Lab: analyse your data with a mouse click
Title: Differential gene expression analysis in Galaxy
Title: Genomics Virtual Lab: analyse your data with a mouse click